Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species
Identifieur interne : 000272 ( Main/Exploration ); précédent : 000271; suivant : 000273Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species
Auteurs : Sajjad Asaf [Corée du Sud] ; Abdul L. Khan [Oman] ; Abdur R. Khan [Corée du Sud] ; Muhammad Waqas [Corée du Sud, Pakistan] ; Sang-Mo Kang [Corée du Sud] ; Muhammad A. Khan [Corée du Sud] ; Seok-Min Lee [Corée du Sud] ; In-Jung Lee [Corée du Sud]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Url:
DOI: 10.3389/fpls.2016.00843
PubMed: 27379132
PubMed Central: 4906380
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Complete Chloroplast Genome of <italic>Nicotiana otophora</italic> and its Comparison with Related Species</title><author><name sortKey="Asaf, Sajjad" sort="Asaf, Sajjad" uniqKey="Asaf S" first="Sajjad" last="Asaf">Sajjad Asaf</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Khan, Abdul L" sort="Khan, Abdul L" uniqKey="Khan A" first="Abdul L." last="Khan">Abdul L. Khan</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Chair of Oman's Medicinal Plants and Marine Natural Products, University of Nizwa</institution><country>Nizwa, Oman</country></nlm:aff><country xml:lang="fr">Oman</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Khan, Abdur R" sort="Khan, Abdur R" uniqKey="Khan A" first="Abdur R." last="Khan">Abdur R. Khan</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Waqas, Muhammad" sort="Waqas, Muhammad" uniqKey="Waqas M" first="Muhammad" last="Waqas">Muhammad Waqas</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Department of Agriculture, Abdul Wali Khan University Mardan</institution><country>Mardan, Pakistan</country></nlm:aff><country xml:lang="fr">Pakistan</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Kang, Sang Mo" sort="Kang, Sang Mo" uniqKey="Kang S" first="Sang-Mo" last="Kang">Sang-Mo Kang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Khan, Muhammad A" sort="Khan, Muhammad A" uniqKey="Khan M" first="Muhammad A." last="Khan">Muhammad A. Khan</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lee, Seok Min" sort="Lee, Seok Min" uniqKey="Lee S" first="Seok-Min" last="Lee">Seok-Min Lee</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lee, In Jung" sort="Lee, In Jung" uniqKey="Lee I" first="In-Jung" last="Lee">In-Jung Lee</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27379132</idno><idno type="pmc">4906380</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4906380</idno><idno type="RBID">PMC:4906380</idno><idno type="doi">10.3389/fpls.2016.00843</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000326</idno><idno type="wicri:Area/Pmc/Curation">000325</idno><idno type="wicri:Area/Pmc/Checkpoint">000222</idno><idno type="wicri:Area/Ncbi/Merge">002097</idno><idno type="wicri:Area/Ncbi/Curation">002097</idno><idno type="wicri:Area/Ncbi/Checkpoint">002097</idno><idno type="wicri:Area/Main/Merge">000272</idno><idno type="wicri:Area/Main/Curation">000272</idno><idno type="wicri:Area/Main/Exploration">000272</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Complete Chloroplast Genome of <italic>Nicotiana otophora</italic> and its Comparison with Related Species</title><author><name sortKey="Asaf, Sajjad" sort="Asaf, Sajjad" uniqKey="Asaf S" first="Sajjad" last="Asaf">Sajjad Asaf</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Khan, Abdul L" sort="Khan, Abdul L" uniqKey="Khan A" first="Abdul L." last="Khan">Abdul L. Khan</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Chair of Oman's Medicinal Plants and Marine Natural Products, University of Nizwa</institution><country>Nizwa, Oman</country></nlm:aff><country xml:lang="fr">Oman</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Khan, Abdur R" sort="Khan, Abdur R" uniqKey="Khan A" first="Abdur R." last="Khan">Abdur R. Khan</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Waqas, Muhammad" sort="Waqas, Muhammad" uniqKey="Waqas M" first="Muhammad" last="Waqas">Muhammad Waqas</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Department of Agriculture, Abdul Wali Khan University Mardan</institution><country>Mardan, Pakistan</country></nlm:aff><country xml:lang="fr">Pakistan</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Kang, Sang Mo" sort="Kang, Sang Mo" uniqKey="Kang S" first="Sang-Mo" last="Kang">Sang-Mo Kang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Khan, Muhammad A" sort="Khan, Muhammad A" uniqKey="Khan M" first="Muhammad A." last="Khan">Muhammad A. Khan</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lee, Seok Min" sort="Lee, Seok Min" uniqKey="Lee S" first="Seok-Min" last="Lee">Seok-Min Lee</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lee, In Jung" sort="Lee, In Jung" uniqKey="Lee I" first="In-Jung" last="Lee">In-Jung Lee</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>School of Applied Biosciences, Kyungpook National University</institution><country>Daegu, South Korea</country></nlm:aff><country xml:lang="fr">Corée du Sud</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Nicotiana otophora</italic> is a wild parental species of <italic>Nicotiana tabacum</italic>, an interspecific hybrid of <italic>Nicotiana tomentosiformis</italic> and <italic>Nicotiana sylvestris</italic>. However, <italic>N. otophora</italic> is least understood as an alternative paternal donor. Here, we compared the fully assembled chloroplast (cp) genome of <italic>N. otophora</italic> and with those of closely related species. The analysis showed a cp genome size of 156,073 bp and exhibited a typical quadripartite structure, which contains a pair of inverted repeats separated by small and large single copies, containing 163 representative genes, with 165 microsatellites distributed unevenly throughout the genome. Comparative analysis of a gene with known function across <italic>Nicotiana</italic> species revealed 76 protein-coding sequences, 20 tRNA sequences, and 3 rRNA sequence shared between the cp genomes. The analysis revealed that <italic>N</italic>. <italic>otophora</italic> is a sister species to <italic>N</italic>. <italic>tomentosiformis</italic> within the <italic>Nicotiana</italic> genus, and <italic>Atropha belladonna</italic> and <italic>Datura stramonium</italic> are their closest relatives. These findings provide a valuable analysis of the complete <italic>N</italic>. <italic>otophora</italic> cp genome, which can identify species, elucidate taxonomy, and reconstruct the phylogeny of genus <italic>Nicotiana</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Asano, T" uniqKey="Asano T">T. Asano</name></author><author><name sortKey="Tsudzuki, T" uniqKey="Tsudzuki T">T. Tsudzuki</name></author><author><name sortKey="Takahashi, S" uniqKey="Takahashi S">S. Takahashi</name></author><author><name sortKey="Shimada, H" uniqKey="Shimada H">H. 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Chen</name></author><author><name sortKey="Tang, H R" uniqKey="Tang H">H. R. Tang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Corée du Sud</li><li>Oman</li><li>Pakistan</li></country></list><tree><country name="Corée du Sud"><noRegion><name sortKey="Asaf, Sajjad" sort="Asaf, Sajjad" uniqKey="Asaf S" first="Sajjad" last="Asaf">Sajjad Asaf</name></noRegion><name sortKey="Kang, Sang Mo" sort="Kang, Sang Mo" uniqKey="Kang S" first="Sang-Mo" last="Kang">Sang-Mo Kang</name><name sortKey="Khan, Abdur R" sort="Khan, Abdur R" uniqKey="Khan A" first="Abdur R." last="Khan">Abdur R. Khan</name><name sortKey="Khan, Muhammad A" sort="Khan, Muhammad A" uniqKey="Khan M" first="Muhammad A." last="Khan">Muhammad A. Khan</name><name sortKey="Lee, In Jung" sort="Lee, In Jung" uniqKey="Lee I" first="In-Jung" last="Lee">In-Jung Lee</name><name sortKey="Lee, Seok Min" sort="Lee, Seok Min" uniqKey="Lee S" first="Seok-Min" last="Lee">Seok-Min Lee</name><name sortKey="Waqas, Muhammad" sort="Waqas, Muhammad" uniqKey="Waqas M" first="Muhammad" last="Waqas">Muhammad Waqas</name></country><country name="Oman"><noRegion><name sortKey="Khan, Abdul L" sort="Khan, Abdul L" uniqKey="Khan A" first="Abdul L." last="Khan">Abdul L. Khan</name></noRegion></country><country name="Pakistan"><noRegion><name sortKey="Waqas, Muhammad" sort="Waqas, Muhammad" uniqKey="Waqas M" first="Muhammad" last="Waqas">Muhammad Waqas</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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